Hi Ze, The cleaned NIFTI data for the 2 resting state sessions are in the Resting State fMRI 1 FIX-Denoised (Extended) and Resting State fMRI 2 FIX-Denoised (Extended) packages. The cleaned grayordinate data for both sedssions are in the Resting State fMRI FIX-Denoised (Compact) package. The original rfMRI_REST1_LR.nii.gz file you asked about is the uncleaned preprocessed NIFTI data that is part of the Resting State fMRI 1 Preprocessed package, so yes you will need to download the one or more of the packages above if you want to work with the Fix-cleaned data.
Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> [email protected]<mailto:[email protected]> www.humanconnectome.org<http://www.humanconnectome.org/> ________________________________ From: [email protected] <[email protected]> on behalf of Glasser, Matthew <[email protected]> Sent: Monday, February 19, 2018 1:26:43 PM To: redhatw; [email protected] Subject: Re: [HCP-Users] hcp preprocessed data in MNI space That is the uncleaned NIFTI data. ${StudyFolder}/${Subject}/MNINonLinear/Results/${fMRIName}/${fMRIName}_hp2000_clean.nii.gz is the cleaned data. Peace, Matt. From: redhatw <[email protected]<mailto:[email protected]>> Date: Monday, February 19, 2018 at 1:24 PM To: Matt Glasser <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] hcp preprocessed data in MNI space Hi Matt, Thanks for sharing. Does that mean I have to download the data again (the extended package)? what is the file " rfMRI_REST1_LR.nii.gz "? Best Ze On Mon, Feb 19, 2018 at 2:20 PM, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: This is available in the extended packages, however in general it is not recommended to compare cortical data across subjects or studies in MNI space or to smooth the data in the volume. The reasons why are covered here: https://www.biorxiv.org/content/early/2018/01/29/255620 Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of redhatw <[email protected]<mailto:[email protected]>> Date: Monday, February 19, 2018 at 1:11 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] hcp preprocessed data in MNI space Dear HCPers, I'm looking for a way to get the preprocessed rsfMRI data in the MNI space. I have only downloaded the preprocessed data, are there any tool to generate that or back-project the MSMAll.dtseries.nii into MNI space? Also, is this file rfMRI_REST1_LR.nii.gz already preprocessed? I noticed that it is in the MNI space. Thanks Ze _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
