Hi Emma,

Are these the same workbench version?  I think we fixed this issue at some 
point along the way.

Matt.

From: 
<[email protected]<mailto:[email protected]>>
 on behalf of Emma Robinson 
<[email protected]<mailto:[email protected]>>
Date: Tuesday, May 1, 2018 at 7:00 AM
To: "[email protected]<mailto:[email protected]>" 
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] Problems viewing volumes using workbench in Linux

Hi

I'm seeing strange behaviour with workbench in linux.

I am looking at neonatal data, processed through the dHCP pipeline but not 
acquired using dHCP acquisition protocols. When I try and look at the surfaces 
overlaid on the volume it works fine on mac but not in linux (see snapshots - 
volume_overlay_mac.png and volume_overlay_linux.png).

However, in mac, when I view them on top of the tissue segmentations, then I 
see a shift (see volume_overlay_labels.png)

It may be worth mentioning that, an issue that I know has come up before with 
other users is that they had problem viewing volumes in workbench that have off 
diagonals in the s/q-form. This I believe is also the case for this data (see 
snapshot from fslhd on data)? I don't really understand why this causing the 
data to look differently on the mac vs the  linux? And why it is not viewing 
properly in workbench? It works fine in fslview.

Thanks

Emma



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