Hello all-

Recently noticed that a new "hcp_fix_multi_run" functionality was added to the 
HCP pipelines.  We are looking forward to implementing this, particularly 
because we have multiple short resting state fMRI runs rather than one long run.

I've run into a few issues however while setting it up. When running the 
hcp_fix_multi_run script I get the following error:
"cat: task-rest1_dims.txt: No such file or directory"

Looking a little deeper I've noticed that the script that is supposed to 
produce this .txt file (functionhighpassandvariancenormalize.m) relies on two 
scripts, iFeta.m and Feta.m, both of which use "#" for a comment rather than 
"%" in their second line, and I believe this is causing the function to error 
out in the MATLAB console.

After replacing "#" with "%"  I am able to get 
functionhighpassandvariancenormalize.m to run through via the MATLAB console 
and produce a "task-rest1_dims.txt" file.  But I still can't get this same 
"dims" file if I run hcp_fix_multi_run from the terminal.

Any thoughts on what might be causing this?

Thank you,
Nick Theis


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