Please get the latest gitrepo and the comment issue should be fixed. Matt.
From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Theis, Nicholas" <the...@upmc.edu<mailto:the...@upmc.edu>> Date: Monday, July 23, 2018 at 1:32 PM To: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Issues implementing ICA FIX Multi Run Tim- I have FSL_FIX_MATLAB_MODE=1 (script version) in my settings.sh file in the Fix directory, however I am still running into the same problem. I will troubleshoot some more and get back to you if I find a solution. Please do let me know if you have other suggestions. -Nick ________________________________ From: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> Sent: Friday, July 20, 2018 4:49:37 PM To: Theis, Nicholas Cc: hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] Issues implementing ICA FIX Multi Run Take a look in the settings.sh file, for FSL_FIX_MATLAB_MODE. If it is set to compiled matlab, then any edits you make to the matlab files won't take effect. We have also made some progress on making it compatible with octave, to avoid the matlab licensing issue (which was the reason for the compiled matlab setting in the first place). Tim On Fri, Jul 20, 2018 at 3:39 PM, Theis, Nicholas <the...@upmc.edu<mailto:the...@upmc.edu>> wrote: Hello all- Recently noticed that a new "hcp_fix_multi_run" functionality was added to the HCP pipelines. We are looking forward to implementing this, particularly because we have multiple short resting state fMRI runs rather than one long run. I've run into a few issues however while setting it up. When running the hcp_fix_multi_run script I get the following error: "cat: task-rest1_dims.txt: No such file or directory" Looking a little deeper I've noticed that the script that is supposed to produce this .txt file (functionhighpassandvariancenormalize.m) relies on two scripts, iFeta.m and Feta.m, both of which use "#" for a comment rather than "%" in their second line, and I believe this is causing the function to error out in the MATLAB console. After replacing "#" with "%" I am able to get functionhighpassandvariancenormalize.m to run through via the MATLAB console and produce a "task-rest1_dims.txt" file. But I still can't get this same "dims" file if I run hcp_fix_multi_run from the terminal. Any thoughts on what might be causing this? Thank you, Nick Theis _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
