That seems reasonable, however I would use the matlab CIFTI tools to wrap the CIFTI to GIFTI conversion and loading into matlab all in one step:
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-2.HowdoyougetCIFTIfilesintoMATLAB? Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Mohammadhesam Ahmadian <[email protected]<mailto:[email protected]>> Date: Saturday, August 11, 2018 at 5:09 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] HCP_MMP1.0 parcellation of the Resting State fMRI FIX-Denoised (Compact) data using workbench.exe Dear all, We have already downloaded the data of Resting State fMRI FIX-Denoised (Compact) of 100 unrelated subjects. We wanted to do some analysis on these data (rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii), so we used the following command (for the first session of the first subject): wb_command.exe -cifti-parcellate rfMRI_REST1_LR_Atlas_MSMAll_hp2000_clean.dtseries.nii Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN glasser_100307_s1_parcellation.ptseries.nii And then we used the following command on the result of the previous command: -cifti-convert -to-gifti-ext Which gave a '.gii' output and then read it with the gifti command in Matlab and it gave a 360 by 1200 matrix which is dimensionally right, but we were wondering if what we have done is correct and has given the correct result. Thanks in advance, Hesam _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
