That’s right, you would want to use the MSMAll aligned CIFTI task fMRI data.
Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Cathy Chen <c...@alumni.princeton.edu<mailto:c...@alumni.princeton.edu>> Date: Wednesday, October 3, 2018 at 1:06 AM To: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Converting greyordinates to Hi Tim and Matt, Thanks for the quick replies! I wanted to use a nifti file such as "3T_tfMRI_MOTOR_preproc\100206\MNINonLinear\Results\tfMRI_MOTOR_LR\tfMRI_MOTOR_LR.nii" (in 91x109x91 space) with a parcellation such as "HCP_S1200_PTNmaps_d15_25_50_100\3T_HCP1200_MSMAll_d15_ts2_Z\100206.dtseries.nii" (in 91282 greyordinate space). Also, I noticed files such as "3T_tfMRI_MOTOR_preproc\100206\MNINonLinear\Results\tfMRI_MOTOR_LR\tfMRI_MOTOR_LR_Atlas.dtseries.nii" and "3T_tfMRI_MOTOR_preproc\100206\MNINonLinear\Results\tfMRI_MOTOR_LR\tfMRI_MOTOR_LR_Atlas_MSMAll.dtseries.nii" -- are these the tfMRI timeseries data already converted to 91282 greyordinate space (ie could I use these files in lieu of trying to convert the tfMRI_MOTOR_LR.nii files from 91x109x91 space to greyordinate space)? Best, Cathy Am Di., 2. Okt. 2018 um 22:47 Uhr schrieb Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>>: If you mean the fact that the HCP MMP v1.0 doesn't include any subcortical indices, you can use "wb_command -cifti-create-dense-from-template" to expand it to the standard 91282 grayordinates. However, the -cifti-parcellate command will allow you to use it on standard 91282 grayordinate data as-is. Tim On Mon, Oct 1, 2018 at 3:15 PM, Cathy Chen <c...@alumni.princeton.edu<mailto:c...@alumni.princeton.edu>> wrote: Hello, I hope you're doing well. Is there a way to convert greyordinates (such as the system used in subject-specific parcellations in the July 2017 release) to the system used in other nifti files in the HCP datasets (such as the processed tfMRI data in the 1200 subjects release)? I would like to use these two datasets together, but have had trouble mapping them to each other. Sorry if I missed this in the documentation or elsewhere! Best, Cathy _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
