To Whom it may concern,
I have created a dlabel file by adding to the Glasser Parcellation from BALSA the subcortical regions of the Freesurfer atlas. Now my goal would be to run a tractography analysis and obtain structural connectivity matrices using this cortical+subcortical parcellation. Could you suggest the simplest way to go from my dlabel file to something that is compatible with diffusion software? I know that probtrackx accepts GIFTIs as input, but I was wondering about how to extend this to subcortical areas. Or rather would the simplest solution be to convert each subject’s parcellation into a series of NIFTI files in native/standard space and input these as ROIs into probtrackx? In this case, could you recommend the correct series of workbench commands? I am also open to other software recommendations besides the FSL suite. Thank you very much, Leonardo Tozzi, MD, PhD Williams PanLab | Postdoctoral Fellow Stanford University | 401 Quarry Rd lto...@stanford.edu<mailto:lto...@stanford.edu> | (650) 5615738 _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
