Stefan,
Could you please send to [email protected] your file and the code?
It does look like a bug.
Thank you!
Elena
On Jun 20, 2011, at 4:53 PM, Stefan Schiffler wrote:
> Hello again, i have played a bit more:
>
> Also building files on Mac/Linux using Matlab
>
> a=zeros(545869,4);
> hdf5write('testfile','/testmatrix',a);
>
> generates files wich are not readable on windows but work perfectly on
> Mac/Linux. Also i tried the new hdf5 1.8.7 which has a slightly more verbose
> output:
>
> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
> major: Dataset
> minor: Read failed
> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
> major: Dataset
> minor: Read failed
> #002: ..\..\..\src\H5Dchunk.c line 1758 in H5D_chunk_read(): chunked read
> fail
> ed
> major: Dataset
> minor: Read failed
> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
> major: Dataspace
> minor: Read failed
> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
> major: Dataspace
> minor: Read failed
> #005: ..\..\..\src\H5Dcontig.c line 890 in H5D_contig_readvv(): can't perform
> vectorized sieve buffer read
> major: Dataset
> minor: Can't operate on object
> #006: ..\..\..\src\H5V.c line 1454 in H5V_opvv(): can't perform operation
> major: Internal error (too specific to document in detail)
> minor: Can't operate on object
> #007: ..\..\..\src\H5Dcontig.c line 691 in H5D_contig_readvv_sieve_cb():
> block
> read failed
> major: Dataset
> minor: Read failed
> #008: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
> metadata
> accumulator failed
> major: Low-level I/O
> minor: Read failed
> #009: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
> reques
> t failed
> major: Low-level I/O
> minor: Read failed
> #010: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
> fail
> ed
> major: Virtual File Layer
> minor: Read failed
> #011: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
> fa
> iled, errno = 22, error message = 'Invalid argument'
> major: Low-level I/O
> minor: Read failed
>
> This application has requested the Runtime to terminate it in an unusual way.
> Please contact the application's support team for more information.
>
>
> This looks like a HDF5 Bug to me.
>
> regards
> Stefan
>
>
>
>> Hi all,
>>
>> i have a problem with hdf5 version 1.8.6. (32 bits) and Visual c++ 2008.
>> i have several files which contain a 4x545869 double - matrix datasset. I
>> can open/read/write these files on linux and mac os, but windows refuses to
>> work with these files.
>>
>> I get the following call stack:
>>
>> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread 0:
>> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
>> major: Dataset
>> minor: Read failed
>> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
>> major: Dataset
>> minor: Read failed
>> #002: ..\..\..\src\H5Dcontig.c line 520 in H5D_contig_read(): contiguous read
>> failed
>> major: Dataset
>> minor: Read failed
>> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
>> major: Dataspace
>> minor: Read failed
>> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
>> major: Dataspace
>> minor: Read failed
>> #005: ..\..\..\src\H5Dcontig.c line 692 in H5D_contig_readvv(): block read
>> fai
>> led
>> major: Low-level I/O
>> minor: Read failed
>> #006: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
>> metadata
>> accumulator failed
>> major: Low-level I/O
>> minor: Read failed
>> #007: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
>> reques
>> t failed
>> major: Low-level I/O
>> minor: Read failed
>> #008: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
>> fail
>> ed
>> major: Virtual File Layer
>> minor: Read failed
>> #009: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
>> fa
>> iled, errno = 22, error message = 'Invalid argument'
>> major: Low-level I/O
>> minor: Read failed
>>
>> This application has requested the Runtime to terminate it in an unusual way.
>> Please contact the application's support team for more information.
>>
>>
>> Is there a way to detect whats wrong with the files? like an integrity
>> checking tool?
>>
>> regards
>>
>> stefan
>>
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> [email protected]
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
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