Stefan,
Actually... Could you please run h5dump on your files on windows and see if you
still get an error?
If yes, then it is HDF5 problem and we will need to take a look.
Thank you!
Elena
On Jun 20, 2011, at 4:53 PM, Stefan Schiffler wrote:
> Hello again, i have played a bit more:
>
> Also building files on Mac/Linux using Matlab
>
> a=zeros(545869,4);
> hdf5write('testfile','/testmatrix',a);
>
> generates files wich are not readable on windows but work perfectly on
> Mac/Linux. Also i tried the new hdf5 1.8.7 which has a slightly more verbose
> output:
>
> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
> major: Dataset
> minor: Read failed
> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
> major: Dataset
> minor: Read failed
> #002: ..\..\..\src\H5Dchunk.c line 1758 in H5D_chunk_read(): chunked read
> fail
> ed
> major: Dataset
> minor: Read failed
> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
> major: Dataspace
> minor: Read failed
> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
> major: Dataspace
> minor: Read failed
> #005: ..\..\..\src\H5Dcontig.c line 890 in H5D_contig_readvv(): can't perform
> vectorized sieve buffer read
> major: Dataset
> minor: Can't operate on object
> #006: ..\..\..\src\H5V.c line 1454 in H5V_opvv(): can't perform operation
> major: Internal error (too specific to document in detail)
> minor: Can't operate on object
> #007: ..\..\..\src\H5Dcontig.c line 691 in H5D_contig_readvv_sieve_cb():
> block
> read failed
> major: Dataset
> minor: Read failed
> #008: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
> metadata
> accumulator failed
> major: Low-level I/O
> minor: Read failed
> #009: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
> reques
> t failed
> major: Low-level I/O
> minor: Read failed
> #010: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
> fail
> ed
> major: Virtual File Layer
> minor: Read failed
> #011: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
> fa
> iled, errno = 22, error message = 'Invalid argument'
> major: Low-level I/O
> minor: Read failed
>
> This application has requested the Runtime to terminate it in an unusual way.
> Please contact the application's support team for more information.
>
>
> This looks like a HDF5 Bug to me.
>
> regards
> Stefan
>
>
>
>> Hi all,
>>
>> i have a problem with hdf5 version 1.8.6. (32 bits) and Visual c++ 2008.
>> i have several files which contain a 4x545869 double - matrix datasset. I
>> can open/read/write these files on linux and mac os, but windows refuses to
>> work with these files.
>>
>> I get the following call stack:
>>
>> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread 0:
>> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
>> major: Dataset
>> minor: Read failed
>> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
>> major: Dataset
>> minor: Read failed
>> #002: ..\..\..\src\H5Dcontig.c line 520 in H5D_contig_read(): contiguous read
>> failed
>> major: Dataset
>> minor: Read failed
>> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
>> major: Dataspace
>> minor: Read failed
>> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
>> major: Dataspace
>> minor: Read failed
>> #005: ..\..\..\src\H5Dcontig.c line 692 in H5D_contig_readvv(): block read
>> fai
>> led
>> major: Low-level I/O
>> minor: Read failed
>> #006: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
>> metadata
>> accumulator failed
>> major: Low-level I/O
>> minor: Read failed
>> #007: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
>> reques
>> t failed
>> major: Low-level I/O
>> minor: Read failed
>> #008: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
>> fail
>> ed
>> major: Virtual File Layer
>> minor: Read failed
>> #009: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
>> fa
>> iled, errno = 22, error message = 'Invalid argument'
>> major: Low-level I/O
>> minor: Read failed
>>
>> This application has requested the Runtime to terminate it in an unusual way.
>> Please contact the application's support team for more information.
>>
>>
>> Is there a way to detect whats wrong with the files? like an integrity
>> checking tool?
>>
>> regards
>>
>> stefan
>>
>>
>>
>> _______________________________________________
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>> [email protected]
>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
>
> _______________________________________________
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> [email protected]
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