Thanks for the hint,
h5dump is still giving output... i will see if it finishes. Anyway it looks
like h5dump is not reading the full dataset at once! I think that is why it
might finish. My code only blows up if i am not using compression, with
compression everything is fine. Hence it seems that only reading the huge
amount of numbers fails. Also HDF-View fails on Windows when reading the
dataset....
regards Stefan
Dr. Stefan Schiffler
Zentrum für Technomathematik
Universität Bremen
Bibliothekstr. 1
D-28359 Bremen
Tel. +49 (0)421 218-63 822
www.scils.de
Am 21.06.2011 um 15:50 schrieb Elena Pourmal:
> Stefan,
>
> Actually... Could you please run h5dump on your files on windows and see if
> you still get an error?
>
> If yes, then it is HDF5 problem and we will need to take a look.
>
> Thank you!
>
> Elena
> On Jun 20, 2011, at 4:53 PM, Stefan Schiffler wrote:
>
>> Hello again, i have played a bit more:
>>
>> Also building files on Mac/Linux using Matlab
>>
>> a=zeros(545869,4);
>> hdf5write('testfile','/testmatrix',a);
>>
>> generates files wich are not readable on windows but work perfectly on
>> Mac/Linux. Also i tried the new hdf5 1.8.7 which has a slightly more verbose
>> output:
>>
>> HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
>> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
>> major: Dataset
>> minor: Read failed
>> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
>> major: Dataset
>> minor: Read failed
>> #002: ..\..\..\src\H5Dchunk.c line 1758 in H5D_chunk_read(): chunked read
>> fail
>> ed
>> major: Dataset
>> minor: Read failed
>> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
>> major: Dataspace
>> minor: Read failed
>> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
>> major: Dataspace
>> minor: Read failed
>> #005: ..\..\..\src\H5Dcontig.c line 890 in H5D_contig_readvv(): can't perform
>> vectorized sieve buffer read
>> major: Dataset
>> minor: Can't operate on object
>> #006: ..\..\..\src\H5V.c line 1454 in H5V_opvv(): can't perform operation
>> major: Internal error (too specific to document in detail)
>> minor: Can't operate on object
>> #007: ..\..\..\src\H5Dcontig.c line 691 in H5D_contig_readvv_sieve_cb():
>> block
>> read failed
>> major: Dataset
>> minor: Read failed
>> #008: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
>> metadata
>> accumulator failed
>> major: Low-level I/O
>> minor: Read failed
>> #009: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
>> reques
>> t failed
>> major: Low-level I/O
>> minor: Read failed
>> #010: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
>> fail
>> ed
>> major: Virtual File Layer
>> minor: Read failed
>> #011: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
>> fa
>> iled, errno = 22, error message = 'Invalid argument'
>> major: Low-level I/O
>> minor: Read failed
>>
>> This application has requested the Runtime to terminate it in an unusual way.
>> Please contact the application's support team for more information.
>>
>>
>> This looks like a HDF5 Bug to me.
>>
>> regards
>> Stefan
>>
>>
>>
>>> Hi all,
>>>
>>> i have a problem with hdf5 version 1.8.6. (32 bits) and Visual c++ 2008.
>>> i have several files which contain a 4x545869 double - matrix datasset. I
>>> can open/read/write these files on linux and mac os, but windows refuses to
>>> work with these files.
>>>
>>> I get the following call stack:
>>>
>>> HDF5-DIAG: Error detected in HDF5 (1.8.6) thread 0:
>>> #000: ..\..\..\src\H5Dio.c line 174 in H5Dread(): can't read data
>>> major: Dataset
>>> minor: Read failed
>>> #001: ..\..\..\src\H5Dio.c line 448 in H5D_read(): can't read data
>>> major: Dataset
>>> minor: Read failed
>>> #002: ..\..\..\src\H5Dcontig.c line 520 in H5D_contig_read(): contiguous
>>> read
>>> failed
>>> major: Dataset
>>> minor: Read failed
>>> #003: ..\..\..\src\H5Dselect.c line 275 in H5D_select_read(): read error
>>> major: Dataspace
>>> minor: Read failed
>>> #004: ..\..\..\src\H5Dselect.c line 210 in H5D_select_io(): read error
>>> major: Dataspace
>>> minor: Read failed
>>> #005: ..\..\..\src\H5Dcontig.c line 692 in H5D_contig_readvv(): block read
>>> fai
>>> led
>>> major: Low-level I/O
>>> minor: Read failed
>>> #006: ..\..\..\src\H5Fio.c line 113 in H5F_block_read(): read through
>>> metadata
>>> accumulator failed
>>> major: Low-level I/O
>>> minor: Read failed
>>> #007: ..\..\..\src\H5Faccum.c line 254 in H5F_accum_read(): driver read
>>> reques
>>> t failed
>>> major: Low-level I/O
>>> minor: Read failed
>>> #008: ..\..\..\src\H5FDint.c line 142 in H5FD_read(): driver read request
>>> fail
>>> ed
>>> major: Virtual File Layer
>>> minor: Read failed
>>> #009: ..\..\..\src\H5FDwindows.c line 827 in H5FD_windows_read(): file read
>>> fa
>>> iled, errno = 22, error message = 'Invalid argument'
>>> major: Low-level I/O
>>> minor: Read failed
>>>
>>> This application has requested the Runtime to terminate it in an unusual
>>> way.
>>> Please contact the application's support team for more information.
>>>
>>>
>>> Is there a way to detect whats wrong with the files? like an integrity
>>> checking tool?
>>>
>>> regards
>>>
>>> stefan
>>>
>>>
>>>
>>> _______________________________________________
>>> Hdf-forum is for HDF software users discussion.
>>> [email protected]
>>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>>
>>
>> _______________________________________________
>> Hdf-forum is for HDF software users discussion.
>> [email protected]
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>
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
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