After you get your unix files to the target system, 
If you need to change ownership of all the directories the following will come 
in handy:

//JS10     EXEC PGM=IKJEFT01                                          
//SYSTSPRT DD   SYSOUT=*                                              
//SYSTSIN  DD   *                                                     
 BPXBATCH SH chown -R USERID:GROUPID   /To_Directory/

Where USERID is the RACF/ACF2/TSS id  that you want to be the owner and
Where GROUPID is the Group you want to be the owner.

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