Hello again Ullrich, I believe the SCIFIO test failure is fixed on the latest master (commit 877bf5<https://github.com/scifio/scifio/commit/877bf58fa27f4aaca09e5caf92a56c5c30d670d9>). Note to self: don't rely on annotations in src/test/java.
Sorry for the inconvenience, but thanks again for bringing it up. - Mark On Thu, Dec 5, 2013 at 2:06 PM, Tobias Pietzsch <pietz...@mpi-cbg.de> wrote: > Hi Ulli, > > > When I try to compile Tobias' code (branch 'buffer'), I get > > > > [WARNING] The POM for > com.github.maven-nar:nar-maven-plugin:jar:3.0.0-rc-3-SNAPSHOT is missing, > no dependency information available > > [ERROR] The build could not read 1 project -> [Help 1] > > > my bad, I set a version of the nar-maven-plugin that cannot be obtained > from the public maven repository but must be build locally. > I reverted to version 3.0.0-rc-2. It should work now. Can you try again? > best regards, > Tobias > > On Dec 5, 2013, at 7:15 PM, Ullrich Koethe < > ullrich.koe...@iwr.uni-heidelberg.de> wrote: > > > Hi Johannes and Tobias, > > > > following your instructions, I now installed all dependencies on Linux > (64-bit Ubuntu, gcc 4.7.3). Here is what I got: > > > > In scifio, maven compiles, but then complains > > > > Failed tests: testDefaultEnabled(io.scif.filters.utests.FilterTest) > > > > In vigra-imglib2 (branch 'wip'), 'mvn install' compiles and produces a > number of compiler warnings which seem to be uncritical on first glance, > but are confusingly flagged as "[ERROR]" in the maven output. > > > > When I finally run './avian-run.sh', I get the following output > > > > java.io.EOFException > > at java.util.zip.InflaterInputStream.read (line 54) > > at java.util.zip.ZipFile$1.read (line 120) > > at java.util.zip.ZipFile$1.read (line 114) > > at java.util.zip.InflaterInputStream.read (line 39) > > at java.util.zip.ZipFile$1.read (line 106) > > at java.util.Properties$InputStreamParser.readCharacter (line 192) > > at java.util.Properties$Parser.parse (line 106) > > at java.util.Properties.load (line 21) > > at net.imglib2.vigra.NarHelper.loadLibrary (line 41) > > at net.imglib2.vigra.VigraImg3DUnsignedByte.<clinit> (line 23) > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 19) > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 14) > > at io.scif.img.ImgOpener.openImg (line 301) > > at io.scif.img.ImgOpener.openImg (line 217) > > at io.scif.img.ImgOpener.openImg (line 200) > > at Example.main (line 34) > > at Example.main (line 22) > > java.lang.ExceptionInInitializerError > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 19) > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 14) > > at io.scif.img.ImgOpener.openImg (line 301) > > at io.scif.img.ImgOpener.openImg (line 217) > > at io.scif.img.ImgOpener.openImg (line 200) > > at Example.main (line 34) > > at Example.main (line 22) > > caused by: java.lang.UnsatisfiedLinkError: Could not find native library > > at net.imglib2.vigra.NarHelper.loadLibrary (line 78) > > at net.imglib2.vigra.VigraImg3DUnsignedByte.<clinit> (line 23) > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 19) > > at net.imglib2.vigra.VigraImgFactory3DUnsignedByte.create (line 14) > > at io.scif.img.ImgOpener.openImg (line 301) > > at io.scif.img.ImgOpener.openImg (line 217) > > at io.scif.img.ImgOpener.openImg (line 200) > > at Example.main (line 34) > > at Example.main (line 22) > > > > No image is created. The input image I used is attached. > > > > When I try to compile Tobias' code (branch 'buffer'), I get > > > > [WARNING] The POM for > com.github.maven-nar:nar-maven-plugin:jar:3.0.0-rc-3-SNAPSHOT is missing, > no dependency information available > > [ERROR] The build could not read 1 project -> [Help 1] > > [ERROR] > > [ERROR] The project net.imglib2.vigra:vigra-imglib2:1.0.0-SNAPSHOT > (/home/ukoethe/src/vigra-imglib2/pom.xml) has 2 errors > > [ERROR] Unresolveable build extension: Plugin > com.github.maven-nar:nar-maven-plugin:3.0.0-rc-3-SNAPSHOT or one of its > dependencies could not be resolved: Failure to find > com.github.maven-nar:nar-maven-plugin:jar:3.0.0-rc-3-SNAPSHOT in > http://mvnplugins.fusesource.org/repo/release was cached in the local > repository, resolution will not be reattempted until the update interval of > mvnplugins.fusesource.org has elapsed or updates are forced -> [Help 2] > > > > Best regards > > Ulli > > <img.pgm> > > > _______________________________________________ > ImageJ-devel mailing list > ImageJ-devel@imagej.net > http://imagej.net/mailman/listinfo/imagej-devel > >
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