Hi Jim, It's a think we could discuss. What would be the trickiest part to make Jalview able to run M-Coffee? Should it based on a web-service interaction?
One more thing, I was trying to integrate the latest release in our web server to show the T-Coffee alignment score, but I'm unable to get it work. It shows the alignment as usual, but not the coloured scores. This is the applet code I'm using: <applet id="applet" code="jalview.bin.JalviewLite" width="800" height="600" archive="public/jalviewApplet.jar"> <param name="file" value="http://localhost:9000/data/7ce04b2b/result.fasta_aln";> <param name="scoreFile" value="http://localhost:9000/data/7ce04b2b/result.score_ascii"; > <param name="embedded" value="true"> <param name="showFeatureSettings" value="false"> <param name="widthScale" value="1.4"> <param name="heightScale" value="1.4"> <param name="nojmol" value="true" > Any idea? Cheers, Paolo On Nov 14, 2012, at 5:31 PM, Jim Procter <[email protected]> wrote: > Hi Paolo - thanks for the nice words ... I'd like to thank you again for > your contributions, too! > > It'd be great to be able to run M-COFFEE from Jalview directly, now we > can visualize the reliability score. That's a bit tricky, but if you're > interested in helping out then we should talk more :) > > Jim. > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
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