Hi Jim, Sorry if I didn't join the Jalview hackathon past month, but at the end I had to participate to an overlapping event.
About the T-Coffee server API unfortunately there is any documentation. But the good news is that a full featured Java client is available. I think it could be easily integrated with Jalview to make it interacts with the T-Coffee web server. The project is available on Github, here https://github.com/paoloditommaso/tcoffee-client The main client class is this https://github.com/paoloditommaso/tcoffee-client/blob/master/src/org/tcoffee/client/TCoffeeClient.java You may find an example how to use it, here https://github.com/paoloditommaso/tcoffee-client/blob/master/src/org/tcoffee/client/CloudCoffee.java Let me know if it helps. Cheers, Paolo On Feb 16, 2013, at 3:19 PM, Jim Procter <[email protected]<mailto:[email protected]>> wrote: Hi Paolo. On 16/11/2012 11:50, Jim Procter wrote: An alternative approach could be to have Jalview interacting with our T-Coffee server (http://tcoffee.crg.cat) which provides as REST based interface. It is a very easy API based on a GET request which return an XML response. It has already support for all the result files produced by T-Coffee (alignment, scores, etc). In this case the problem would be to make Jalview able to interact with it. I was just experimenting with POSTing to the http://tcoffee.crg.cat/apps/tcoffee/do:core URL with an alignment - but didn't have much luck. Do you have any documentation for the API ? Jim. _______________________________________________ Jalview-dev mailing list [email protected]<mailto:[email protected]> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
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