Hi Jim,
https://github.com/paoloditommaso/tcoffee-client/blob/master/src/org/tcoffee/client/TCoffeeClient.java I see your using Xstream (http://xstream.codehaus.org/) - I'd not heard of it before, it looks really useful! Yes, pretty useful! >From what I can see here, the client takes native tcoffee suite command lines. >Is there some kind of machine readable command line argument description file >in the source ? What do you mean by "machine readable command line argument description". The idea is exactly as you said, the client takes any native T-Coffee command line options, and execute it on the server side. When it terminates, collects the result files and send them back to the client. The only requirement is to prefix input file arguments with the "file:" string, doing that the client takes care to upload them in the scratch folder where T-Coffe will be execute. It is tricky, isn't it ? ;) Cheers, Paolo Jim. _______________________________________________ Jalview-dev mailing list [email protected]<mailto:[email protected]> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
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