Nope, no error for me with that file and steps either. It looks as though UserDefinedColours.resetButtonPanel() should populate the upperCaseButtons Vector. I can't see how to break this!
mungo On Mon, Sep 29, 2014 at 1:06 PM, David Roldán Martínez <[email protected]> wrote: > Mungo, > > These are the steps I've followed (see > http://issues.jalview.org/browse/JAL-1420 comments). > > 1. Load an alignment (I'm attaching the clustal omega file) > 2. Colour -> User defined... > 3. Press OK/Apply button > > If the patch is not applied, you'll find an stacktrace similar to > Exception in thread "AWT-EventQueue-2" > java.lang.ArrayIndexOutOfBoundsException: 0 >= 0 > at java.util.Vector.elementAt(Vector.java:470) > at > jalview.gui.UserDefinedColours.getSchemeFromButtons(UserDefinedColours.java:464) > > ..... > > If the patch is applied, a warning message is shown to the user until > he/she makes a colour selection for the scheme (see Captura.PNG at the > jira). > > I'm testing under Release_2_8_2_Branch. > > Cheers, > David > > 2014-09-29 13:52 GMT+02:00 Mungo Carstairs <[email protected]>: > >> I'm not seeing any error in the console either. >> >> m >> >> On Mon, Sep 29, 2014 at 12:01 PM, David Roldán Martínez < >> [email protected]> wrote: >> >>> Hi Mungo, >>> No apparent error at the gui but an exception appears at the console. >>> Cheers, >>> David >>> El 29/09/2014 10:26, "Mungo Carstairs" <[email protected]> escribió: >>> >>>> Hello David, >>>> >>>> JAL-1420 - I'm not succeeding in reproducing the error before trying >>>> the patch. >>>> I seem to be able to apply / OK / save a colour scheme with no colours >>>> selected, without error. >>>> Any tips for reproducing the error? >>>> >>>> Thanks >>>> >>>> Mungo >>>> >>>> On Fri, Sep 26, 2014 at 7:53 PM, David Roldán Martínez < >>>> [email protected]> wrote: >>>> >>>>> ok. I'll try to take a look tomorrow. Thanks! >>>>> El 26/09/2014 14:13, "Mungo Carstairs" <[email protected]> escribió: >>>>> >>>>>> Hi David, >>>>>> >>>>>> 95% ok but some things to tidy up! >>>>>> >>>>>> I've dumped all my findings as a comment to JAL-1428. >>>>>> Please have a look some time and let me know if anything isn't clear >>>>>> or you disagree. >>>>>> >>>>>> Thanks! >>>>>> >>>>>> Mungo >>>>>> >>>>>> On Thu, Sep 25, 2014 at 1:52 PM, Mungo Carstairs < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> Hi David, >>>>>>> >>>>>>> >>>>>>> I'll have a go with your branch and let you know if I spot >>>>>>> anything *algo que falta.* >>>>>>> >>>>>>> >>>>>>> Thanks, >>>>>>> >>>>>>> >>>>>>> Mungo >>>>>>> ------------------------------ >>>>>>> *From:* [email protected] < >>>>>>> [email protected]> on behalf of David Roldán Martínez >>>>>>> <[email protected]> >>>>>>> *Sent:* 23 September 2014 17:32 >>>>>>> *To:* Jalview Development List >>>>>>> *Subject:* [Jalview-dev] i18n review for 2.8.2 >>>>>>> >>>>>>> Hi all, >>>>>>> >>>>>>> I've just fixed all the i18n bugs I've found for 2.8.2. They're >>>>>>> commited at Release_2_8_2_Branch_i18n ( >>>>>>> http://source.jalview.org/gitweb/?p=jalview.git;a=shortlog;h=refs/heads/Release_2_8_2_Branch_i18n >>>>>>> ). >>>>>>> >>>>>>> Although I've made some basic tests before to commit, I'm not an >>>>>>> advanced Jalview user and thus I would appreciate if anybody checkouts >>>>>>> branch code and make further tests. If, additionally, these tests are >>>>>>> documented at wiki, for future releases I'l be able to do them on my >>>>>>> own. :) >>>>>>> >>>>>>> Now I'm going to work with translations. Let's see Jalview speaking >>>>>>> more languages!!!! >>>>>>> >>>>>>> Cheers, >>>>>>> David >>>>>>> >>>>>>> The University of Dundee is a registered Scottish Charity, No: >>>>>>> SC015096 >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Jalview-dev mailing list >>>>>>> [email protected] >>>>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>>>> >>>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Jalview-dev mailing list >>>>>> [email protected] >>>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>>> >>>>>> >>>>> _______________________________________________ >>>>> Jalview-dev mailing list >>>>> [email protected] >>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>> >>>>> >>>> >>>> _______________________________________________ >>>> Jalview-dev mailing list >>>> [email protected] >>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>> >>>> >>> _______________________________________________ >>> Jalview-dev mailing list >>> [email protected] >>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>> >>> >> >> _______________________________________________ >> Jalview-dev mailing list >> [email protected] >> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >> >> > > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev > >
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