ups. then I suggest to close the ticket as non reproducible or apply the original patch that prevents for potential NPE. What do you think about that? El 29/09/2014 14:44, "Mungo Carstairs" <[email protected]> escribió:
> Nope, no error for me with that file and steps either. > It looks as though UserDefinedColours.resetButtonPanel() should populate > the upperCaseButtons Vector. > I can't see how to break this! > > mungo > > On Mon, Sep 29, 2014 at 1:06 PM, David Roldán Martínez <[email protected] > > wrote: > >> Mungo, >> >> These are the steps I've followed (see >> http://issues.jalview.org/browse/JAL-1420 comments). >> >> 1. Load an alignment (I'm attaching the clustal omega file) >> 2. Colour -> User defined... >> 3. Press OK/Apply button >> >> If the patch is not applied, you'll find an stacktrace similar to >> Exception in thread "AWT-EventQueue-2" >> java.lang.ArrayIndexOutOfBoundsException: 0 >= 0 >> at java.util.Vector.elementAt(Vector.java:470) >> at >> jalview.gui.UserDefinedColours.getSchemeFromButtons(UserDefinedColours.java:464) >> >> ..... >> >> If the patch is applied, a warning message is shown to the user until >> he/she makes a colour selection for the scheme (see Captura.PNG at the >> jira). >> >> I'm testing under Release_2_8_2_Branch. >> >> Cheers, >> David >> >> 2014-09-29 13:52 GMT+02:00 Mungo Carstairs <[email protected]>: >> >>> I'm not seeing any error in the console either. >>> >>> m >>> >>> On Mon, Sep 29, 2014 at 12:01 PM, David Roldán Martínez < >>> [email protected]> wrote: >>> >>>> Hi Mungo, >>>> No apparent error at the gui but an exception appears at the console. >>>> Cheers, >>>> David >>>> El 29/09/2014 10:26, "Mungo Carstairs" <[email protected]> escribió: >>>> >>>>> Hello David, >>>>> >>>>> JAL-1420 - I'm not succeeding in reproducing the error before trying >>>>> the patch. >>>>> I seem to be able to apply / OK / save a colour scheme with no colours >>>>> selected, without error. >>>>> Any tips for reproducing the error? >>>>> >>>>> Thanks >>>>> >>>>> Mungo >>>>> >>>>> On Fri, Sep 26, 2014 at 7:53 PM, David Roldán Martínez < >>>>> [email protected]> wrote: >>>>> >>>>>> ok. I'll try to take a look tomorrow. Thanks! >>>>>> El 26/09/2014 14:13, "Mungo Carstairs" <[email protected]> escribió: >>>>>> >>>>>>> Hi David, >>>>>>> >>>>>>> 95% ok but some things to tidy up! >>>>>>> >>>>>>> I've dumped all my findings as a comment to JAL-1428. >>>>>>> Please have a look some time and let me know if anything isn't clear >>>>>>> or you disagree. >>>>>>> >>>>>>> Thanks! >>>>>>> >>>>>>> Mungo >>>>>>> >>>>>>> On Thu, Sep 25, 2014 at 1:52 PM, Mungo Carstairs < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>>> Hi David, >>>>>>>> >>>>>>>> >>>>>>>> I'll have a go with your branch and let you know if I spot >>>>>>>> anything *algo que falta.* >>>>>>>> >>>>>>>> >>>>>>>> Thanks, >>>>>>>> >>>>>>>> >>>>>>>> Mungo >>>>>>>> ------------------------------ >>>>>>>> *From:* [email protected] < >>>>>>>> [email protected]> on behalf of David Roldán >>>>>>>> Martínez <[email protected]> >>>>>>>> *Sent:* 23 September 2014 17:32 >>>>>>>> *To:* Jalview Development List >>>>>>>> *Subject:* [Jalview-dev] i18n review for 2.8.2 >>>>>>>> >>>>>>>> Hi all, >>>>>>>> >>>>>>>> I've just fixed all the i18n bugs I've found for 2.8.2. They're >>>>>>>> commited at Release_2_8_2_Branch_i18n ( >>>>>>>> http://source.jalview.org/gitweb/?p=jalview.git;a=shortlog;h=refs/heads/Release_2_8_2_Branch_i18n >>>>>>>> ). >>>>>>>> >>>>>>>> Although I've made some basic tests before to commit, I'm not an >>>>>>>> advanced Jalview user and thus I would appreciate if anybody checkouts >>>>>>>> branch code and make further tests. If, additionally, these tests are >>>>>>>> documented at wiki, for future releases I'l be able to do them on my >>>>>>>> own. :) >>>>>>>> >>>>>>>> Now I'm going to work with translations. Let's see Jalview >>>>>>>> speaking more languages!!!! >>>>>>>> >>>>>>>> Cheers, >>>>>>>> David >>>>>>>> >>>>>>>> The University of Dundee is a registered Scottish Charity, No: >>>>>>>> SC015096 >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> Jalview-dev mailing list >>>>>>>> [email protected] >>>>>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Jalview-dev mailing list >>>>>>> [email protected] >>>>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>>>> >>>>>>> >>>>>> _______________________________________________ >>>>>> Jalview-dev mailing list >>>>>> [email protected] >>>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>>> >>>>>> >>>>> >>>>> _______________________________________________ >>>>> Jalview-dev mailing list >>>>> [email protected] >>>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>>> >>>>> >>>> _______________________________________________ >>>> Jalview-dev mailing list >>>> [email protected] >>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>>> >>>> >>> >>> _______________________________________________ >>> Jalview-dev mailing list >>> [email protected] >>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >>> >>> >> >> _______________________________________________ >> Jalview-dev mailing list >> [email protected] >> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev >> >> > > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev > >
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