Mark the time -- Whoo-Hooo! (note the last line) C javax.swing.JPanel resized to java.awt.Rectangle[x=0,y=0,width=1050,height=550] jalviewApplet_PanelUI_11_2 setBounds 0 0 1050 550 op=3 get parameter: debug = true JalviewLite Version test Build Date : unknown Installation : Webstart get parameter: externalstructureviewer = null get parameter: nojmol = null get parameter: separator = null get parameter: RGB = null get parameter: label = null get parameter: file = uniref50.fa get parameter: enableSplitFrame = null get parameter: embedded = true BYPASSING JMOL LOADING FOR NOW. THIS WILL BE DONE ANOTHER WAY Loading thread started with: >>file uniref50.fa>>endfile Loading started. Resource 'uniref50.fa' was not located by classloader. Prepended document base for resource: 'uniref50.fa' Protocol identified as 'URL' File identified as 'FASTA'
*Successfully loaded file.* On Fri, Jul 17, 2015 at 4:08 PM, James Procter <[email protected]> wrote: > > > On 17/07/2015 15:11, Robert Hanson wrote: > > Oh, SO CLOSE!!!! > > !! \o/ !! > > Loading thread started with: > >>file > uniref50.fa>>endfile > Loading started. > Resource 'uniref50.fa' was not located by classloader. > Prepended document base for resource: 'uniref50.fa' > Protocol identified as 'URL' > File identified as 'FASTA' > Failed to read alignment using the 'FASTA' reader. > TypeError: this.alignFile is null > > hmm. it identified as FASTA - which means data should have been read > (remember, jalview uses the contents to work out what format the file is, > NOT the .extension. So something is broken further down ? > > Jim > > > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Department of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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