Wow!!! More tea????!!!
On 18/07/2015 16:02, Robert Hanson wrote:
Mark the time -- Whoo-Hooo! (note the last line)
C javax.swing.JPanel resized to
java.awt.Rectangle[x=0,y=0,width=1050,height=550]
jalviewApplet_PanelUI_11_2 setBounds 0 0 1050 550 op=3
get parameter: debug = true
JalviewLite Version test
Build Date : unknown
Installation : Webstart
get parameter: externalstructureviewer = null
get parameter: nojmol = null
get parameter: separator = null
get parameter: RGB = null
get parameter: label = null
get parameter: file = uniref50.fa
get parameter: enableSplitFrame = null
get parameter: embedded = true
BYPASSING JMOL LOADING FOR NOW. THIS WILL BE DONE ANOTHER WAY
Loading thread started with:
>>file
uniref50.fa>>endfile
Loading started.
Resource 'uniref50.fa' was not located by classloader.
Prepended document base for resource: 'uniref50.fa'
Protocol identified as 'URL'
File identified as 'FASTA'
*Successfully loaded file.
*
On Fri, Jul 17, 2015 at 4:08 PM, James Procter <[email protected]
<mailto:[email protected]>> wrote:
On 17/07/2015 15:11, Robert Hanson wrote:
Oh, SO CLOSE!!!!
!! \o/ !!
Loading thread started with:
>>file
uniref50.fa>>endfile
Loading started.
Resource 'uniref50.fa' was not located by classloader.
Prepended document base for resource: 'uniref50.fa'
Protocol identified as 'URL'
File identified as 'FASTA'
Failed to read alignment using the 'FASTA' reader.
TypeError: this.alignFile is null
hmm. it identified as FASTA - which means data should have been
read (remember, jalview uses the contents to work out what format
the file is, NOT the .extension. So something is broken further down ?
Jim
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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--
Geoff Barton | Professor of Bioinformatics | Head of Division of Computational
Biology
College of Life Sciences | University of Dundee, Scotland, UK |
[email protected]
Tel: +44 1382 385860 | www.compbio.dundee.ac.uk | twitter: @gjbarton
The University of Dundee is registered Scottish charity: No.SC015096
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