not quite yet, perhaps. Aspirin, though....

And Julia's fantastic dinner....

We are not out of the woods yet.


On Sat, Jul 18, 2015 at 6:14 PM, Jim Procter <[email protected]> wrote:

> Perhaps a G and T may now be most appropriate ?
>
> On 18 Jul 2015 16:24, Robert Hanson <[email protected]> wrote:
> >
> > TEA??
> >
> > On Sat, Jul 18, 2015 at 4:22 PM, Geoff Barton <[email protected]>
> wrote:
> >>
> >> Wow!!!  More tea????!!!
> >>
> >>
> >> On 18/07/2015 16:02, Robert Hanson wrote:
> >>>
> >>> Mark the time -- Whoo-Hooo! (note the last line)
> >>>
> >>> C javax.swing.JPanel resized to
> java.awt.Rectangle[x=0,y=0,width=1050,height=550]
> >>> jalviewApplet_PanelUI_11_2 setBounds 0 0 1050 550 op=3
> >>> get parameter: debug = true
> >>> JalviewLite Version test
> >>> Build Date : unknown
> >>> Installation : Webstart
> >>> get parameter: externalstructureviewer = null
> >>> get parameter: nojmol = null
> >>> get parameter: separator = null
> >>> get parameter: RGB = null
> >>> get parameter: label = null
> >>> get parameter: file = uniref50.fa
> >>> get parameter: enableSplitFrame = null
> >>> get parameter: embedded = true
> >>> BYPASSING JMOL LOADING FOR NOW. THIS WILL BE DONE ANOTHER WAY
> >>> Loading thread started with:
> >>> >>file
> >>> uniref50.fa>>endfile
> >>> Loading started.
> >>> Resource 'uniref50.fa' was not located by classloader.
> >>> Prepended document base for resource: 'uniref50.fa'
> >>> Protocol identified as 'URL'
> >>> File identified as 'FASTA'
> >>> Successfully loaded file.
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> On Fri, Jul 17, 2015 at 4:08 PM, James Procter <[email protected]>
> wrote:
> >>>>
> >>>>
> >>>>
> >>>> On 17/07/2015 15:11, Robert Hanson wrote:
> >>>>>
> >>>>> Oh, SO CLOSE!!!!
> >>>>
> >>>> !! \o/ !!
> >>>>>
> >>>>> Loading thread started with:
> >>>>> >>file
> >>>>> uniref50.fa>>endfile
> >>>>> Loading started.
> >>>>> Resource 'uniref50.fa' was not located by classloader.
> >>>>> Prepended document base for resource: 'uniref50.fa'
> >>>>> Protocol identified as 'URL'
> >>>>> File identified as 'FASTA'
> >>>>> Failed to read alignment using the 'FASTA' reader.
> >>>>> TypeError: this.alignFile is null
> >>>>
> >>>> hmm. it identified as FASTA - which means data should have been read
> (remember, jalview uses the contents to work out what format the file is,
> NOT the .extension. So something is broken further down ?
> >>>>
> >>>> Jim
> >>>>
> >>>>
> >>>> _______________________________________________
> >>>> Jalview-dev mailing list
> >>>> [email protected]
> >>>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
> >>>>
> >>>
> >>>
> >>>
> >>> --
> >>> Robert M. Hanson
> >>> Larson-Anderson Professor of Chemistry
> >>> Chair, Department of Chemistry
> >>> St. Olaf College
> >>> Northfield, MN
> >>> http://www.stolaf.edu/people/hansonr
> >>>
> >>>
> >>> If nature does not answer first what we want,
> >>> it is better to take what answer we get.
> >>>
> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >>>
> >>>
> >>>
> >>> _______________________________________________
> >>>
> >>> Jalview-dev mailing list
> >>>
> >>> [email protected]
> >>>
> >>> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
> >>>
> >>
> >> --
> >>
> >> Geoff Barton | Professor of Bioinformatics | Head of Division of
> Computational Biology
> >>
> >> College of Life Sciences | University of Dundee, Scotland, UK |
> [email protected]
> >>
> >> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk | twitter: @gjbarton
> >>
> >>
> >>
> >>
> >>
> >> The University of Dundee is registered Scottish charity: No.SC015096
> >>
> >>
> >> _______________________________________________
> >> Jalview-dev mailing list
> >> [email protected]
> >> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
> >>
> >
> >
> >
> > --
> > Robert M. Hanson
> > Larson-Anderson Professor of Chemistry
> > Chair, Department of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
> _______________________________________________
> Jalview-dev mailing list
> [email protected]
> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
>



-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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