Hello!

I hope this is the right place where to get some suggestions or solutions
to my problem. I am using JalviewLite Linked Applets on my website. Problem
is that I would like to link protein multiple sequence alignment (MSA) with
its corresponding DNA alignment, meaning that, if I click on the amino acid
in some sequence in protein MSA view then the corresponding codon (three
nucleotides) should be highlighted by jalview on the follower view. Simpler
solution would be for example, if I click on the second amino acid in some
protein sequence in MSA then the fourth nucleotide should be highlighted
(maybe n*3-2 correction?). At the moment if I enter a protein MSA to main
view and corresponding nucleotide MSA to follower view and I select a
protein at second position then second nucleotide highlights on follower
view.


I hope this problem is understandable and someone can help me.

All the Best,
Mikk Puustusmaa
[email protected]
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