The last one probably representing a molecule size of 7000 to 8000 atoms and gives OutOfMemory exception unless I give the -Xmx option to the JVM. NOTE THAT EVEN THE GEOMETRIES OR APPEARANCE HASNT BEEN ADDED AND I CANNOT SHARE SHAPES AS EACH ATOM MAY HAVE A DIFFERENT APPEARANCE.
Hi, here you say that you cannot share shapes because some "may" have different app. Can't you share the shape between those shapes that have the same app (some form of canonicalization/flyweight)?
Bye
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