Bob wrote:

> [snip]
> But some will imagine a reaction sequence such as that
> Diels-Alder reaction, where bonds change.
> ... I guess what I'm arguing for is a flexibility in bonding but not
> necessarily in number of atoms.

Jmol will *always* prefer to take the bonds from the file and faithfully
render what is in the file.

> Here's a question: what happens if, upon an
> animFrameCallback you send a script to the target model?

Probably something will break ... and there is a good chance that the
browser will break before Jmol breaks.

> 1. Could one then create an animation that shows atoms, bonds, etc.
> differently
> from frame to frame that way--even change their colors? Has anyone tried
> this?

Yes. It works fine today.

> 2. Could such a script be incorporated somehow right into the CML or MOL
> description (say, for instance, on that comment line?)

Discussions like this have come up from time-to-time.
Currently there is no support for it.


Miguel



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