thanks, that's certainly interesting that extractModel gives that error.
Oh, I know -- you tried to make a MOL file with more than 999 atoms.
That's all. extractModel is admittedly a bit crude.
OK, well, then, that is good news. Now if Miguel would tell me the
same, I'd be quite pleased.
Timothy Driscoll wrote:
On May 17, 2006, at 1:50 p, Bob Hanson wrote:
I do see an error when I click extractModel, though:
java.security.PrivilegedActionException:
java.lang.reflect.InvocationTargetException
at java.security.AccessController.doPrivileged(Native Method)
at sun.plugin.liveconnect.SecureInvocation$2.run
(SecureInvocation.java:212)
at java.security.AccessController.doPrivileged(Native Method)
at sun.plugin.liveconnect.SecureInvocation.CallMethod
(SecureInvocation.java:191)
at sun.plugin.liveconnect.SecureInvocation.access$300
(SecureInvocation.java:51)
at sun.plugin.liveconnect.SecureInvocation$CallMethodThread.run
(SecureInvocation.java:122)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at sun.plugin.javascript.invoke.JSInvoke.invoke(JSInvoke.java:19)
at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at sun.plugin.javascript.JSClassLoader.invoke(JSClassLoader.java:44)
at sun.plugin.liveconnect.PrivilegedCallMethodAction.run
(SecureInvocation.java:580)
... 6 more
Caused by: java.lang.StringIndexOutOfBoundsException: String index
out of range: -1
at java.lang.String.substring(String.java:1768)
at org.jmol.viewer.ModelManager.rFill(ModelManager.java:832)
at
org.jmol.viewer.ModelManager.getBondRecordMOL(ModelManager.java:826)
at
org.jmol.viewer.ModelManager.getModelExtract(ModelManager.java:800)
at org.jmol.viewer.Viewer.getModelExtract(Viewer.java:2985)
at org.jmol.viewer.PropertyManager.getPropertyAsObject
(PropertyManager.java:194)
at
org.jmol.viewer.PropertyManager.getProperty(PropertyManager.java: 158)
at org.jmol.viewer.Viewer.getProperty(Viewer.java:2980)
at org.jmol.applet.Jmol.getPropertyAsString(Jmol.java:556)
at JmolApplet.getPropertyAsString(JmolApplet.java:72)
... 16 more
[3550] :Error - java.security.PrivilegedActionException:
java.security.PrivilegedActionException:
java.lang.reflect.InvocationTargetException
d) press LOAD. Everything seem to be OK?
nope. :-( third time at the page, I pushed the 'load' button and
it locked up my browser. I could not continue with the other steps.
Macs!!!
watch it, man. ;-)
Sorry, hit SEND before I finished that thought:
Macs!!! You have to love them for what they are.
:)
Bob
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