On Jun 23, 2006, at 7:52 AM, Bob Hanson wrote:
> right. There are a couple of schemes I can think of --
>
>
> where you pick off coord in the coordList based on scanning the
> atomList
>
> void replaceCoordinates(BitSet atomList, Point3f[] coordList) {
> int ipt = 0;
> for (int i = atomList.size(); --i >=0;)
> if(atomList.get(i))
> atoms[i].point3f.set(coordList[ipt++])
> }
>
> for example, would do the trick.
bob, what is the purpose of the atomList variable here? in
particular, why are you using a BitSet? is it supposed to indicate
which coordinates are to be replaced?
>> 2) if you do think this will work quickly enough, do you think i
>> should work from the inside out, that is, from the Frame class to the
>> ModelManager, and so on, out to Eval? or vice versa?
>>
>> what i think would be great is a command like:
>>
>> "update (# of atoms) (coordinates of atoms)"
>>
>>
> Be more specific here. What do you actually mean? Perhaps:
>
> update (atomno<=10) {coord1} {coord2} {coord3} ......
>
> Are you sure we want this to be a script command? (this will slow the
> operation considerably)
> Question 1: Do you want to access this from a web page for the applet?
> Question 2: Do you primarily want to use the application?
>
> We could much better, I think, make this a JmolViewer interface
> function.
you're right, a script command isn't the best way. for my purposes
this would be in an applet context. new coordinates (i.e. calls to
this method) would be passed in either through javascript (and i
guess Jmol-new.js) or a separate java control applet. that's another
issue that is probably outside the scope of this topic, is it easy to
allow another embedded applet in the same page communicate with jmol?
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