http://www.stolaf.edu/academics/chemapps/jmol/temp/memory.jpg
is an Excel graph showing memory use during a 2563-command script.
Using:

*    Runtime runtime = Runtime.getRuntime();
    runtime.gc();
    long bTotal = runtime.totalMemory();
    long bFree = runtime.freeMemory();
*
the top of the graph is (bTotal)
the lower trace is (bTotal-bFree)

This script does all sorts of things, including some pretty major 
surfaces and several molecular orbitals.

All: I'm not seeing a memory problem here, right?

Henry, you can create this graph yourself. Just use

loglevel = 2

when you load the applet, then from the Java log you will start seeing 
just a few messages, namely:

ZAP memory inuse, total, free, max: 6869960 22384640 15514680 99942400

Just copy those into

http://www.stolaf.edu/academics/chemapps/jmol/temp/memory.xls

and report back to us what you see.

For these purposes, you will need to use the latest JAR file 
JmolApplet-11-1-10a.jar in

http://www.stolaf.edu/academics/chemapps/jmol/temp

Bob






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