Thanks for the traslucency tip Bob, but I control it with a separate command
by using a checkbox.
2007/8/6, Einar Coutin <[EMAIL PROTECTED]>:
>
> Yep, thanks for the answers. Previously I did what pim schravendijk(thanks
> for the answer Pim) recommended. But since this is event triggered, the
> solution works but then is not very decent(you see the surfaces change from
> translucent to opaque to translucent). I will try with the
> translucent/opaque configuration and tell you what happens.
>
> 2007/8/5, Bob Hanson <[EMAIL PROTECTED]>:
> >
> > Einar, the documentation is not very clear on this, and the coding logic
> > may be questionable.
> >
> > isosurface color XXXX
> >
> > only applies to isosurfaces such as MOs that have positive/negative
> > phases. Since
> >
> > isosurface "filename.cube"
> >
> > is not considered to be of that type, the color parameter in
> >
> > isosurface color red "filename.cube'
> >
> > is ignored. Two options:
> >
> > 1) use the "opaque ..." format:
> >
> > isosurface "filename.cube" opaque red
> >
> > 2) explicitly indicate phase for the isosurface:
> >
> > isosurface phase color green "filename.cube"
> >
> > I suggest (1) rather than (2), because that gives you full control over
> > translucency as well:
> >
> > isosurface "filename.cube" translucent 0.3 red
> >
> > Bob
> >
> >
> >
> > Einar Coutin wrote:
> >
> > > Hello:
> > >
> > > In Jmol v 11.2.4 when I enter in the console the following command:
> > >
> > > isosurface COLOR red "../jmol/datos/moleculas/ch3cl-density.cub.gz";
> > >
> > > The isosurface is loaded with an ORANGE color instead of red. I want
> > > to create the isosurface and give it the color I want in one sentence,
> >
> > >
> > > Any help would be much appreciated.
> > >
> > >
> > > Einar CoutÃn.
> > >
> >
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> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> >
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