2007/8/5, Bob Hanson <[EMAIL PROTECTED]>:
>
> Einar, the documentation is not very clear on this, and the coding logic
> may be questionable.
>
> isosurface color XXXX
>
> only applies to isosurfaces such as MOs that have positive/negative
> phases. Since
>
> isosurface "filename.cube"
>
> is not considered to be of that type, the color parameter in
>
> isosurface color red "filename.cube'
>
> is ignored. Two options:
>
> 1) use the "opaque ..." format:
>
> isosurface "filename.cube" opaque red
>
> 2) explicitly indicate phase for the isosurface:
>
> isosurface phase color green "filename.cube"
>
> I suggest (1) rather than (2), because that gives you full control over
> translucency as well:
>
> isosurface "filename.cube" translucent 0.3 red
What if I want to identify my isosurfaces with posi and nega, like this:
isosurface phase color blue posi 0.005 "../jmol/datos/moleculas/benzene-
homo.cub.gz"#??
Jmol outputs an error:
ERROR en guión:el argumento no es válido(Script Error: argument is not
valid)
----
isosurface phase color blue >> posi <<
0.125"../jmol/datos/moleculas/benzene-
homo.cub.gz"
It's having problems with the Isosurfae identifier
> Bob
>
>
>
> Einar Coutin wrote:
>
> > Hello:
> >
> > In Jmol v 11.2.4 when I enter in the console the following command:
> >
> > isosurface COLOR red "../jmol/datos/moleculas/ch3cl-density.cub.gz";
> >
> > The isosurface is loaded with an ORANGE color instead of red. I want
> > to create the isosurface and give it the color I want in one sentence,
> >
> > Any help would be much appreciated.
> >
> >
> > Einar Coutín.
> >
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
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