>select 1.1
>save coordinates 1
Thanks Bob,
superposition works fine now.
Two questions:
1. How to specify pdb insertion codes in selections
2. Can I obtain the JMenuBar?
Three bugs:
1. Why zoom with wheel and not ctrl-wheel? Bug or by intention?
2. Tilde (i.e. $HOME) not working in file paths
3. Tab-File-path-completion not working.
Otherwise I am happy with jmol.
And here an Exception.
I think I did not wait for Jmol to be completely loaded
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at org.jmol.modelset.ModelCollection.isTrajectory(Unknown Source)
at org.jmol.shapebio.BioShapeCollection.setVisibilityFlags(Unknown
Source)
at org.jmol.viewer.ShapeManager.setModelVisibility(Unknown Source)
at org.jmol.viewer.Viewer.setModelVisibility(Unknown Source)
at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
at charite.christo.protein.ChJmol.paintHook(ChJmol.java:237)
at charite.christo.ChUtils.paintHooks(ChUtils.java:8299)
at charite.christo.ChPanel.paintComponent(ChPanel.java:38)
at javax.swing.JComponent.paint(JComponent.java:1029)
at charite.christo.ChPanel.paint(ChPanel.java:58)
at javax.swing.JComponent.paintToOffscreen(JComponent.java:5124)
at
javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(RepaintManager.java:1479)
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