at 5.26p EDT on 2004 February 25 Wednesday hens borkent said: > > However, Jan Reichert pointed out a web site which does have some .pdb > > files which have individual frames stored as MODELs: > > http://molmovdb.mbb.yale.edu/molmovdb/ > > > > They are somewhat hard to find, but they call them 'interpolation as NMR > > format PDB file'. > > ok, I call them 'psuedo-NMR files' but six of one, half dozen the other.
> I think Jan is the person to confirm or deny that PDB Models are used > for animations. At his site there are morphed structures, and bundles > in Protein Explorer, I couldn't locate a 'proper' pdb animation though. > Great site by the way. > ...although there may be other folks routinely building such things, too. ;-) > > I do not understand what this Chime command is supposed to do. Is it > > the case that when nmrpdb=false then only the first model is loaded? > > I cannot imagine what auto/true are supposed to do. > Quote from the manual: > nmrpdb=true "sets the MIME type to the NMR-PDB mime type so that > multiframe pdb-files can be loaded." > This suggest that =false will result in loading the first structure > only. > I believe this command is no longer viable. Chime automatically detects multiple-model files and loads all of the models without using a separate mime. RasMol 2.7 and later does this as well. > See next answer. > > Q: Is there some other way to identify a pdb MODEL, other than by model > > number? > > not generically, no. > > Q: In Chime, can you only show one model, or can you show several ... as in: > > model 2,3? > This I have to try, never used it myself. > yes, you can: select (model=1,model=2,model=3) wireframe 0.3 regards, :tim -- timothy driscoll molvisions - molecular graphics & visualization <http://www.molvisions.com/> usa:north carolina:wake forest ------------------------------------------------------- SF.Net is sponsored by: Speed Start Your Linux Apps Now. Build and deploy apps & Web services for Linux with a free DVD software kit from IBM. Click Now! http://ads.osdn.com/?ad_id56&alloc_id438&op=click _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
