On 9/1/05 (6:46 ) Bob Hanson wrote: >Good, so we are at the heart of the issue. OK, so it DOES make sense >that monitors are associated only with VISIBLE atoms, as you >describe. > >I think it makes sense, and I withdraw my recommendation that this >is a bug. >
I ran into problems trying to show hbonding patterns within an alpha helix, or between beta strands, when they are in cartoon format. hbond calculation adds many hbonds that are not useful, or even reasonable, so I try to use monitor lines instead. my work-around has been to spacefill the alpha-carbon atoms, but this is not always a good solution. tim -- Timothy Driscoll molvisions - see, grasp, learn. <http://www.molvisions.com/> earth:usa:virginia:blacksburg "A computer lets you make more mistakes faster than any other invention, with the possible exceptions of handguns and Tequilla." - Mitch Ratcliffe ------------------------------------------------------- SF.Net email is Sponsored by the Better Software Conference & EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile & Plan-Driven Development * Managing Projects & Teams * Testing & QA Security * Process Improvement & Measurement * http://www.sqe.com/bsce5sf _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
