> About connect/wireframe. Maybe I wasn't clear. > > wireframe SINGLE, DOUBLE, AROMATIC, etc. > > makes good sense.
Feedback from others indicated that they thought that bond order should also be part of the 'connect' command. > Just like wireframe ON/OFF, we aren't defining bonds, > just > tweaking how they are displayed (at least from a user perspective). Where you stand depends upon where you sit. > I was only suggesting > > wireframe DELETE > > should be > > connect DELETE > > because that, like other connect commands, can do permanent "damage" to > a model. > > Now we have > > connect SINGLE .... > > and this makes no sense, or at least (even) I was fooled just now and > surprised that > it did not actually CONNECT the atoms specified. > > I suppose the best solution is something like: > > select carbon > CONNECT 1.2 (hydrogen) SINGLE > CONNECT 1.3 (all) DOUBLE > CONNECT 1.6 (all) SINGLE > > and not use > > CONNECT SINGLE > CONNECT DOUBLE > > at all. > > Would you like me to try my hand at this, now that I know how to compile > Jmol? I think that we should wait and see what feedback we get from others. I have reservations about specifying bond order at the same time that the connections are made ... because it is not clear to me what the behavior should be if a bond of a different order already exists. In addition, the evaluation engine would need a little work in order to take a parameter after the target-atom-set-expression ... no commands currently do that. Bob, I think it would be a good idea for you to coordinate with others on the list to determine what the commands should be. Miguel ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnk&kid3432&bid#0486&dat1642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
