On Feb 2, 2006, at 5:58 p, Tamas Horvath wrote:
hi Tamas,
are all of your models aligned to your reference structure? if so,
you could just add your reference as a separate model in your multi-
model file - no need to add it as a chain to every model. Jmol has
decent tools to manipulate models. (there are several tools available
for aligning models, for example, DeepView.)
Indeed they are aligned. So u say that e.g. I can make jmol render
model 0 as static, and all the others animated?
you can write a script that would step through each MD-generated
model, while keeping the reference model visible - as far as I know.
can someone with more immediate experience in animating multiple-
model files please confirm this? perhaps even share a script
snippet? (sorry, I don't have time to test this myself just now...)
best,
tim
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