...
my opinion is, this is OK, hbonds should be created visible, as are
single or double bonds.
I agree.
There is some subtle interaction with some of the old rasmol-compatibility
hbond code.
I will investigate.
This is a broader question but ...
Q: Is there ever a reason why someone would want hbonds turned off?
yes, normally they are not shown (simplify the image, less confusing
network), this can be done by
select NoHbondsPart
hbonds off
Q: Why should hbonds ever be treated differently from normal bonds?
these are weak interactions, but numerous
Q: If you read in a file that contains hbonds, do you want them displayed
by default?
yes, predefined hbonds should be seen on load pdb file.
Regards, Jan
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