Miguel wrote:
Previously, hbonds were not displayed when a file was loaded until someone
said 'hbonds on'. I assume that I did it this way for RasMol
compatibility.
You sure? Even if they were in the the pdb as rasmol? Please double-check.
Regardless of Rasmol, I believe hbonds indicated in the PDB files SHOULD be
shown by default. Otherwise there is no way to distinguish them from
Jmol-generated hbonds.
It certainly seems to me that if there are hbonds defined in the file then
they should be displayed. As you said above, the user can turn them off
with 'hbonds off'.
I just checked in code which changes hbond behavior. hbonds are now
created with the default bond radius rather than with a default radius of
0.
NOTE: If you feel that hbonds should NOT be displayed by default then
please post a message arguing your position.
CALCULATED hbonds must not be shown by default, only if calculated using "hbonds
ON".
--
--
Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107
Professor of Chemistry, St. Olaf College
1520 St. Olaf Ave., Northfield, MN 55057
mailto:[EMAIL PROTECTED]
http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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