Following my zooming post, I downloaded 11.0.2 and tested it on a
number of pre-server local tests I had working with 10. On one of
these the molecule loaded and confirmed that a motif was more
zoomable than on Jmol 10. (There were some bugs, but these were that
are minor compared with the one I describe below).
I then tried another local test, and after removing all Jmol.js
complications from the page, I still got the following message
displayed by the applet in red on a black screen with no protein
loaded (i.e. nothing to do with zoom or any other post-loading
manipulation.):
java.lang.StringIndexOutOfBoundsException:
String
Index out of range: 70
The relevant part of the html page is:
<script type="text/javascript">
jmolInitialize("jmol");
jmolApplet(300, "load jmol/1aylH.pdb; set background white; cpk off;
restrict protein; wireframe off; backbone 0.3; zoom 150; centre
selected; select 232,254,333; colour [50,255,0]; set hydrogen off");
</script>
If I remove all after "load jmol/1aylH.pdb;" I still get the
exception, and I get it with a couple of other files referencing
other proteins. You will notice the H in the pdb file - this is in
all file names as they are hi-res single-subunit files from the
Richardson 500 collection of proteins. They have various internal
annotations, but they work in Jmol 10 and RasMol.
I can't see how it can be anything but the pdb files. Would that fit
with changes made in file reading between 10 and 11?
David
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