Hi again On 11 Sep 2007 at 17:46, NARENDHAR THOTA wrote: > EMBED width=300 height=200 type=chemical/x-mdl-molfile structure > ="<%=myStructureString%>" queryformbox="document.myForm.Structure"
I see. I had never heard about that "structure" parameter and the Chime string format. I see that it is some MDL internal format. Quoting MDL: --structure-- Description: Used instead of src to load an in-line compressed molfile. The compressed molfile is a compressed, URL-safe encoded version of the structure file. It is generated by Chemscape Server. So, my first guess is that it should be Chemscape Server who can transform it into a MOLfile. > I can right click on the window and import mol file, or I can alsopaste in a > structure. > > So, when I readthe Stringdocument.myForm.Structure as request.getParameter... > on server > side,I get the structure in chime String format, like I have pointed out in > my previous mail. > I am trying to get the structure as mol file format instead of chime string, > there could be easy > way, may be inclient itself. I can use some javascript to get the structure > in mol format, but I am > not sure how to get that ;-) . I tried different ways but without much > success. The major problem here is that MDL formats are not open. I cannot help with that. You should ask MDL support. Of course, once you have the MOL file there's no problem to get it into Jmol. There are several links on Google speaking of this compressed molfile, within the context of the Marvin program. Maybe you can get some clue there. Or this may help you: http://www.ccl.net/chemistry/resources/messages/2006/08/10.002-dir/index.html quote: "I guess you are talking about the compressed molfile strings Chime uses? The CACTVS toolkit (www.xemistry.com/academic, free for academic use) can read and write them, and convert them into *all* of your desired formats." ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
