Hi Angel,
Sorry for my late respose, thanks for your help.
I found a webservice (provided internally in my company) will help with this
situation.
Thanks for all your help, I appreciate it!!.
Naren.
On 9/11/07, Angel Herraez <[EMAIL PROTECTED]> wrote:
>
> Hi again
>
> On 11 Sep 2007 at 17:46, NARENDHAR THOTA wrote:
> > EMBED width=300 height=200 type=chemical/x-mdl-molfile structure
> > ="<%=myStructureString%>" queryformbox="document.myForm.Structure"
>
> I see. I had never heard about that "structure" parameter and the Chime
> string format.
> I see that it is some MDL internal format. Quoting MDL:
>
> --structure--
> Description: Used instead of src to load an in-line compressed molfile.
> The compressed
> molfile is a compressed, URL-safe encoded version of the structure file.
> It is generated by
> Chemscape Server.
>
> So, my first guess is that it should be Chemscape Server who can transform
> it into a
> MOLfile.
>
> > I can right click on the window and import mol file, or I can alsopaste
> in a structure.
> >
> > So, when I readthe Stringdocument.myForm.Structure as
> request.getParameter... on server
> > side,I get the structure in chime String format, like I have pointed out
> in my previous mail.
>
>
> > I am trying to get the structure as mol file format instead of chime
> string, there could be easy
> > way, may be inclient itself. I can use some javascript to get the
> structure in mol format, but I am
> > not sure how to get that ;-) . I tried different ways but without much
> success.
>
> The major problem here is that MDL formats are not open. I cannot help
> with that. You
> should ask MDL support.
> Of course, once you have the MOL file there's no problem to get it into
> Jmol.
>
> There are several links on Google speaking of this compressed molfile,
> within the context of
> the Marvin program. Maybe you can get some clue there.
> Or this may help you:
>
> http://www.ccl.net/chemistry/resources/messages/2006/08/10.002-dir/index.html
> quote:
> "I guess you are talking about the compressed molfile strings Chime uses?
> The CACTVS toolkit (www.xemistry.com/academic, free for academic use) can
> read and write them, and convert them into *all* of your desired formats."
>
>
>
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