Quoting Angel Herráez <[EMAIL PROTECTED]>: Thanks a lot Angel...
>> http://q4md-forcefieldtools.org/REDDB/ > > Right now I cannot se any models in that page due to a Java security > lock. (It may be my > system, these problems are more frequent lately with new versions of Java). Which browser/OS do you use ? I modified the source code of the pages containing the java applets. This helps to solve some problems; under konqueror at least... - I also have problems under linux & 64 bit machines. Konqueror works fine by providing the path to the java binary: firefox & opera cannnot display the java applet. Do you have any information about java - firefox/opera under linux 64-bits ? - With konqueror, or opera/firefox under linux 32-bits, I load the applet and right click to display the "Java Applet Window". Under windows the position of this Java Applet Window is correct; under linux it goes on an extreme side (left or right) of the screen. Any idea why ? > The menu choices are very restricted, giving only the most common > options, but yes you > can get atom charge either using the console or a script within the webpage: > label %P > (that is for partial charge; formal charge is %C but I gues that's > not what you need) > The FF atom type can be displayed in a label using the recently added > label %B Thanks. Concerning the CML file format, is it possible to add a description of the FF atom types in this file format ? i.e. adding a specific keyword for FF atom types in: <atomArray> <atom id="C1" elementType="C" x3="1.352215" y3="-0.788524" z3="0.179722"><scalar dictRef="jmol:charge">-0.287</scalar></atom> </atomArray> > In addition, if you want those to be in the pop-up menu, you can > create and load a custom pop-up menu for your applets. See > http://wiki.jmol.org:81/index.php/Custom_Menus Thanks again regards, Francois ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
