Hi, I am trying to view a molecular dynamics simulation, where bonds are being formed and destroyed. The data is in the XYZ format containing multiple structures. However I would like to use my own cut-off distances for bonds. Is there a way to do this in Jmol ? Are the bonds being evaluated at each MD step or just at the first one ?
I was searching the documentation, but there I found that you can change only Van der Vaals radius but not the covalent. Regards, Karol ------------------------------------------------------------------------------ Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are powering Web 2.0 with engaging, cross-platform capabilities. Quickly and easily build your RIAs with Flex Builder, the Eclipse(TM)based development software that enables intelligent coding and step-through debugging. Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
