I tried this script:

function setConnections
    set refreshing false
    connect {*} {*} delete
    connect 1.79 (_Si) (_H);
    connect 2.16 (_Si) (_N);
    connect 0.90 (_H) (_H);
    connect 1.18 (_H) (_N);
    connect 1.20 (_N) (_N);
    set refreshing true
end function

load TRAJECTORY myfile.xyz
set animFrameCallback "jmolScript:setConnections"

It seems it is much faster than loading
the file not as a trajectory.
However when I run the animation the screen
starts to flicker.

Karol


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