I think you may need to use a frame change callback. You can have it running a jmol script function that uses the connect command. It will slow down the animation, but should work.
Sent from my iPhone On Mar 22, 2009, at 2:56 AM, [email protected] wrote: > Hi, > > I am trying to view a molecular dynamics simulation, where bonds are > being > formed and destroyed. The data is in the XYZ format containing > multiple > structures. However I would like to use my own cut-off distances for > bonds. > Is there a way to do this in Jmol ? > Are the bonds being evaluated at each MD step or just at the first > one ? > > I was searching the documentation, but there I found that you can > change > only Van der Vaals radius but not the covalent. > > Regards, > > Karol > > > --- > --- > --- > --------------------------------------------------------------------- > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) > are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly > and > easily build your RIAs with Flex Builder, the Eclipse(TM)based > development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are powering Web 2.0 with engaging, cross-platform capabilities. Quickly and easily build your RIAs with Flex Builder, the Eclipse(TM)based development software that enables intelligent coding and step-through debugging. Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
