Probably the best examples are at
http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/examples/basic/org/jmol/
There shouldn't be a problem with the popup menu. What happens when you
right-click? What happens when you click on the Jmol logo in the lower-right
corner?
On Sun, Oct 4, 2009 at 11:29 AM, Vincent Le Guilloux <
[email protected]> wrote:
>
> Hi,
>
> I'm planing to integrate JMol to my application to view PDB files and
> ligand pockets. Basically, my pockets will be represented by several
> spheres placed in the structure (input as PQR format), and atoms next
> to those speres, and I want the user to be able to select and extract
> pocket interactively.
>
> Anyway, I'm currently using a small code snippet taken from the
> biojava documentation. It makes use of the JmolSimpleViewer class.
>
> So currently, I'm able to display a pdb file in the viewer and execute
> some rasmol-like queries.
>
> My question would be: is there any way to get the Jmol popup menu that
> one get when right clicking on the desktop version of Jmol ?
>
> And more generally, what is the best and most recent place to learn
> how to integrate Jmol into an application? I'm currently using
> Biojava's examples, and I've checked the Jmol wiki here:
> http://wiki.jmol.org/index.php?title=Applications_Embedding_Jmol
>
> but currently I haven't found the way to do what I want to do.
>
> Thanks in advance!
> Vincent
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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