HI I have a protein, 2 chaind displaye din Jmol window both on the web and standalone
on the web i use a script to select all Transmenebrane regions usng a script Ior (reset them) I intend to highligh or reset JUST the TM regions this is fine stand alone but within a web page my selection /colouring works but also removes the rest of the protein chains too. the scripts are $ more resetAllTM select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or 186-205:d; wireframe 100; spacefill 100; colour grey select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or 186-205:b; wireframe 100; spacefill 100; colour grey $ more AllTM hide none select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or 186-205:d; wireframe 150; spacefill 150; colour red select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or 186-205:b; wireframe 150; spacefill 150; colour red the same commands cut/paste into the colsole for the stand alone Jmol produce my intended result the web eliminates the non TM regions whilst displaying the TM's red spacefill and red Am I under a misconception? who can I persuade the web to mimic the standalone behavior You can view my effort at http://www.kcl.ac.uk/ip/philcunningham/christer/oct09/3h90.html the all tm button is on the right hand side hoping some one can help thanks Phil -- Phil Cunningham Senior Bioinformatics Officer Room 3.157 Franklin Wilkins Building Department of Biochemistry King's College University of London 150 Stanford Street London SE1 9NH tel 020 7848 4239 fax 020 7848 4500 email [email protected] ------------------------------------------------------------------------------ Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
