Phil Cunningham wrote: > HI > I have a protein, 2 chaind displaye din Jmol window both on the web and > standalone > > on the web i use a script to select all Transmenebrane regions usng a > script Ior (reset them) > I intend to highligh or reset JUST the TM regions > > this is fine stand alone but within a web page my selection /colouring > works but also removes the rest of the protein chains too. > > the scripts are > > $ more resetAllTM > select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or 186-205:d; > wireframe 100; spacefill 100; colour grey > > select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or 186-205:b; > wireframe 100; spacefill 100; colour grey > > > $ more AllTM > hide none > select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or 186-205:d; > wireframe 150; spacefill 150; colour red > > select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or 186-205:b; > wireframe 150; spacefill 150; colour red > > > the same commands cut/paste into the colsole for the stand alone Jmol > produce my intended result > the web eliminates the non TM regions whilst displaying the TM's red > spacefill and red > Phil, did you solve the problem already? I don't observe what you describe. On my computer (openSuSE Linux 11.1 64Bit, Java 1.6.0_15) the TM switch only affects the transmembrane regions, nothing else changes or disappears.
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