Jan, this has nothing to do with Jmol.js. It's a change in the versions of
Jmol. I try to minimize that, but I think in the case of contourlines we may
have a backward-compatibility issue. First upgrade to the latest 11.8, and I
would appreciate your checking 11.9 as well. These are pretty recent fixes.
Thanks.
Bob
2009/11/22 Jan Halborg Jensen <jhjen...@kemi.ku.dk>
> I get different results depending on whether I view
> http://propka.ki.ku.dk/~jhjensen/h2oprinc.xyz<http://propka.ki.ku.dk/%7Ejhjensen/h2oprinc.xyz>using
> Jmol on my computer or on my webspage (
> http://propka.ki.ku.dk/~jhjensen/h2odensity.hml<http://propka.ki.ku.dk/%7Ejhjensen/h2odensity.hml>
> ).
>
> On my machine the contourlines are not filled, but on the webserver they
> are. I assume this is due to the fact that I use Jmol.jar on my machine and
> Jmol.js on the webpage.
>
> Futhermore Jmol.js seems to ignore "contourlines nofill" if I add that to
> the script.
>
> I am using Jmol 11.8.2.
>
> Any help is appreciated.
>
> Thanks, Jan
>
>
>
> The script that h2princ.xyz load looks like this:
>
> isosurface planex plane {0 0 0 0} contour 20 color absolute 0.002 0.05 "
> http://propka.ki.ku.dk/~jhjensen/h2oprinc.cube.gz<http://propka.ki.ku.dk/%7Ejhjensen/h2oprinc.cube.gz>
> "
> delay 3
> spin y 20
> delay 9
> spin off
> isosurface planey plane {1 0 0 0} contour 20 color absolute 0.002 0.05 "
> http://propka.ki.ku.dk/~jhjensen/h2oprinc.cube.gz<http://propka.ki.ku.dk/%7Ejhjensen/h2oprinc.cube.gz>
> "
> spin y 20
> delay 9
> spin off
> isosurface planez plane {0 1 0 0} contour 20 color absolute 0.002 0.05 "
> http://propka.ki.ku.dk/~jhjensen/h2oprinc.cube.gz<http://propka.ki.ku.dk/%7Ejhjensen/h2oprinc.cube.gz>
> "
> spin x 40
> delay 9
> spin off
> isosurface threed 0.002
> "http://propka.ki.ku.dk/~jhjensen/h2oprinc.cube.gz<http://propka.ki.ku.dk/%7Ejhjensen/h2oprinc.cube.gz>
> "
> color isosurface red ; color isosurface translucent 0.15
> spin y 20
> delay 9
> spin off
> color isosurface red ; color isosurface translucent 0.3
> select all; spacefill 100 %babel
> spin y 20
> delay 9
> spin off
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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