Thanks Angel that worked a treat, looks like the relevant documentation is here:
http://chemapps.stolaf.edu/jmol/docs/#atomproperties
And Here:
http://chemapps.stolaf.edu/jmol/docs/#atomexpressions

Although it looks like I could use {atomno=1}.spacefill 

Thanks again


> Hi Graeme
>
> There is probably a way to read the current spacefill value of an atom, but I 
> cannot tell you
> for sure.
> You could use some JmolScript (or a JavaScript) variables to keep track of 
> your current
> values for each atom. Not the best solution, but will work (at least if you 
> have few atoms).
>
> Hey, here it is!
> {atomno=1}.radius
> gives you the size in angstrom (not in percent)

                                          
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