I am again making an effort to render electron density maps (EDM) in Jmol, for protein crystallographic structures. If anyone else has done this, or has suggestions, please let me know!
Jmol's script document list XPLOR as an input file format, but not CCP4 map format. So I assume the best way to proceed is to get the .hkl XPLOR EDM file and load it into Jmol. I haven't gotten that far yet, but I'm working on it. So far, it seems that the only EDM server I've found is at Uppsala (http://eds.bmc.uu.se) and it generates O, CCP4, CNS, and EZD, none of which we think are .hkl XPLOR format. A crystallographer here says the XPLOR is an older, now less used format. Most people now use CCP4 .map format. The CCP4 version 6.1.0 program suite appears to have a bug in the conversion to XPLOR .hkl format, which omits the phases. I am currently downloading 6.1.3 to see if that bug is fixed. Thanks, -- Eric Martz, Ph.D. Professor Emeritus, Microbiology, University of Massachusetts, Amherst http://martz.molviz.org ------------------------------------------------------------------------------ This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
