Dear Tom, I cannot speak for the PDB, but I am currently in Israel collaborating with the Proteopedia team, and that is why the renewed interest in electron density maps -- so yes, Proteopedia will be very interested when we succeed!
-Eric At 1/13/10, Thomas Stout wrote: >Very exciting! This would be of enormous value (at least to me & >the protein crystallography community). I should think the PDB & >Proteopedia would be quite interested as well... > >-Tom > > >On Wed, Jan 13, 2010 at 8:59 AM, Eric Martz ><<mailto:[email protected]>[email protected]> wrote: >I am again making an effort to render electron density maps (EDM) in >Jmol, for protein crystallographic structures. If anyone else has >done this, or has suggestions, please let me know! > >Jmol's script document list XPLOR as an input file format, but not >CCP4 map format. So I assume the best way to proceed is to get the >.hkl XPLOR EDM file and load it into Jmol. I haven't gotten that far >yet, but I'm working on it. > >So far, it seems that the only EDM server I've found is at Uppsala >(<http://eds.bmc.uu.se>http://eds.bmc.uu.se) and it generates O, >CCP4, CNS, and EZD, none of which we think are .hkl XPLOR format. A >crystallographer here says the XPLOR is an older, now less used >format. Most people now use CCP4 .map format. > >The CCP4 version 6.1.0 program suite appears to have a bug in the >conversion to XPLOR .hkl format, which omits the phases. I am >currently downloading 6.1.3 to see if that bug is fixed. > >Thanks, >-- >Eric Martz, Ph.D. >Professor Emeritus, Microbiology, University of Massachusetts, Amherst ><http://martz.molviz.org>http://martz.molviz.org > > > > > > > >------------------------------------------------------------------------------ >This SF.Net email is sponsored by the Verizon Developer Community >Take advantage of Verizon's best-in-class app development support >A streamlined, 14 day to market process makes app distribution fast and easy >Join now and get one step closer to millions of Verizon customers ><http://p.sf.net/sfu/verizon-dev2dev>http://p.sf.net/sfu/verizon-dev2dev >_______________________________________________ >Jmol-users mailing list ><mailto:[email protected]>[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > >------------------------------------------------------------------------------ >This SF.Net email is sponsored by the Verizon Developer Community >Take advantage of Verizon's best-in-class app development support >A streamlined, 14 day to market process makes app distribution fast and easy >Join now and get one step closer to millions of Verizon customers >http://p.sf.net/sfu/verizon-dev2dev >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
