Very exciting! This would be of enormous value (at least to me & the protein crystallography community). I should think the PDB & Proteopedia would be quite interested as well...
-Tom On Wed, Jan 13, 2010 at 8:59 AM, Eric Martz <[email protected]> wrote: > I am again making an effort to render electron density maps (EDM) in Jmol, > for protein crystallographic structures. If anyone else has done this, or > has suggestions, please let me know! > > Jmol's script document list XPLOR as an input file format, but not CCP4 map > format. So I assume the best way to proceed is to get the .hkl XPLOR EDM > file and load it into Jmol. I haven't gotten that far yet, but I'm working > on it. > > So far, it seems that the only EDM server I've found is at Uppsala ( > http://eds.bmc.uu.se) and it generates O, CCP4, CNS, and EZD, none of > which we think are .hkl XPLOR format. A crystallographer here says the XPLOR > is an older, now less used format. Most people now use CCP4 .map format. > > The CCP4 version 6.1.0 program suite appears to have a bug in the > conversion to XPLOR .hkl format, which omits the phases. I am currently > downloading 6.1.3 to see if that bug is fixed. > > Thanks, > -- > Eric Martz, Ph.D. > Professor Emeritus, Microbiology, University of Massachusetts, Amherst > http://martz.molviz.org > > > > > > > > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and > easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users >
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